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| Cluster | Chromosome | Count | Expected | log2FE | Adjusted.pvalue |
|---|---|---|---|---|---|
| Cluster023 | Chr1 | 9 | 2.25 | 2.00 | 1.161e-02 |
| Cluster004 | Chr4 | 129 | 47.29 | 1.45 | 7.434e-24 |
| Cluster022 | Chr4 | 14 | 5.03 | 1.48 | 1.156e-02 |
| Cluster037 | Chr4 | 23 | 3.35 | 2.78 | 9.033e-14 |
| Cluster084 | Chr4 | 9 | 1.48 | 2.61 | 1.659e-04 |
| Cluster074 | Chr12 | 8 | 0.48 | 4.05 | 6.337e-07 |
Table showing clusters with significant chr enrichments (adjusted p-value < 0.05 and log2 fold change > 1).
| Cluster | Freq | |
|---|---|---|
| 4 | Cluster004 | 121 |
| 37 | Cluster037 | 18 |
| 22 | Cluster022 | 14 |
| 84 | Cluster084 | 6 |
Table showing the numbers of chromosome 4 zinc finger genes in the biolayout clusters (more than 5 in a cluster).
The table below shows the clusters with enrichments significantly larger than expected by chance for the chromosome 4 zinc finger genes.
| Cluster | Category | Count | Expected | log2FE | pvalue | adjusted.pvalue |
|---|---|---|---|---|---|---|
| Cluster004 | Chr4ZnF | 121 | 8.34 | 3.86 | 4.243e-100 | 2.546e-99 |
| Cluster022 | Chr4ZnF | 14 | 0.89 | 3.98 | 1.608e-13 | 9.647e-13 |
| Cluster037 | Chr4ZnF | 18 | 0.59 | 4.93 | 3.500e-23 | 2.100e-22 |
| Cluster084 | Chr4ZnF | 6 | 0.26 | 4.53 | 1.201e-07 | 7.206e-07 |
Table showing clusters with significant enrichments (adjusted p-value < 0.05).
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Histogram showing the distribution of genes in clusters 4, 22, 37 and 84.
Histogram showing the distribution of NLR genes on chromosome 4 (binwidth = 5 Mb).
Histogram showing the distribution of genes in clusters 4, 22, 37 and 84, split by cluster.
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
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## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
## which will replace the existing scale.
## Scale for 'fill' is already present. Adding another scale for 'fill',
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## quartz_off_screen
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Histogram of Pearson coefficients between paralogous gene pairs (binwidth = 0.1)
Histogram of Pearson coefficients of a random selection of 3000 genes pairs.